Set heat to low and simmer for seven years

When Jeannette Whitton and I hatched the idea of writing a paper on species concepts in 2016, we had no conceptual agenda and, thank goodness, no deadline. We had three motivations: each of us knew that their view of species was unfinished, despite many years of occasional contemplation; we had an invitation from Matt Haber to a special workshop; and our different but overlapping backgrounds made us a good team. Jeannette is a speciation and population biologist who grew up (academically) alongside taxonomists; I am a taxonomist and systematist raised alongside varied evolutionary biologists. Jeannette’s curiosity was provoked by the structuring of biodiversity that she saw on the landscape, wondering what are these forms with distributions and distinctive traits. My curiosity came from memories of exciting (contentious? vicious?) discussions by systematists in the 1970s and 80s, as well as conversations over many years about species taxonomy with my brother David. Also, I had some unfinished business: I had touched on species concepts tangentially in my 1997 gene trees paper, but hadn’t returned to develop the ideas. We didn’t think the literature had answered our curiosities. Despite the progress made by Mishler, de Queiroz and others, the questions already well answered were not the questions we were asking.

Our paper is out (https://doi.org/10.18061/bssb.v2i1.9358)! I want to tell the story of how it developed because it is a good example of the importance of patience and courage. The patience allowed for Slow Science. That mattered. The courage helped us work with collaborators (each other) with different inclinations and different (initial) perspectives. Indeed, I should have said “how it developed from my vantage point”, because Jeannette’s journey and mine were, of course, different. (Jeannette tells her story here.) The story will be long, though not as long as our journeys or our paper!

My starting point, as Jeannette and I began working together, was philosophical and abstract. I assumed that species weren’t real (in some deep sense), that alternative constructs would serve different purposes, and that a detached pluralism was going to be the solution. I expected our paper would outline a menu of alternative tightly-defined species concepts, from which each biologist could choose their favourite. I imagined we were going to propose definitions centred on utility to biologists, almost as if we were at best ignoring Nature, at worse telling it how to be, taking control of it.

Jeannette’s starting point, as I (too slowly) came to appreciate, was different. She saw species as objects untamed, sovereign, with their own agency and their own reality independent from the contemplation of any biologist. Our different inclinations stemmed not from an irresolvable conflict of worldview, but, I suspect, from the different acuities of our conceptual eyes. Jeannette is stronger than I am at grasping complex dynamic entities, and so it’s comfortable for her to see them more completely, in their wholeness. (I think her ability comes from the patience and attentiveness with which she integrates information.) I am good at conceptual reductionism, but that means I have to break things into pieces, and if I get the first cut wrong, I can get stuck. Well, as it turns out, I did get stuck.

The question we were asking was, what is a species? Biologists have given many different answers to this question, and there’s a reason for it. The world of species concepts is a shapeshifting nightmare, full of the ghosts of perceptions and possibilities. Species are genes and bodies tumbling through time, rivers of descent with trickles of mixing. The bodies have forms and actions and potentials and interactions. They live in a complex ecology. Their genes have a past, a present, and (many of them) a future. And, everything is changing, generation by generation, with feedback. It’s a labyrinth in 6 dimensions (more likely 1000, but let’s be shy and just say 6). It is riotous. It’s a wonder that there could possibly even be something “simple” inside the labyrinth that we might want to call a species. Biologists try to find a place to stand, and a direction to face, to view this “simple” thing. It’s like the blind men and the elephant. Each biologist finds a slightly different point of view and strains to interpret the 6 dimensions in a simple way. Whatever simplicity they see might as likely be an illusion imposed by their predefined focus as an aspect of reality. It’s a scary place. If it weren’t, species concepts would have been resolved long ago.

In the first few months of pondering together, Jeannette and I took some tiny steps forward toward a common view involving reproductive communities, feedback processes, and the chain of cause and effect from cohesive processes to genealogies to traits. We wrote a talk for Matt’s 2017 workshop, and gave it. In retrospect, the ideas we had then seem hopelessly incomplete.

For the next couple of years, I took the lead on the writing, partly because Jeannette was focused on other projects, partly because I had more practice in writing in a theoretical voice. As I wrote, I tried to expand the ideas Jeannette and I had developed for the workshop, tried to carry on with the threads from my gene tree paper, tried to remember things I’d thought about decades ago, tried to catch up on the literature. I was trying to see species as synchronic things, defined only in this moment, but at the same time thinking that rank had to be set by long term forecasting, while also remembering that in 1986 I was convinced that retrospection was the only viable approach (see Note at end). This brawl between the present, the future, and the past swirled in my mind. I sought a truce by writing, paragraphs and paragraphs, but I couldn’t resolve the battle. I worked on it only occasionally; I had other projects also.

Every so often, I thought that the pieces were almost coming together, that I could see an almost complete picture, that we had shone the light almost everywhere in the labyrinth. I knew there were still murky conceptual regions that I hadn’t faced. I hoped they were just small corners rather than whole rooms. But, whenever Jeannette and I would talk about the paper, I could tell that she had her own flashlight and was standing in a different room that I hadn’t explored, one of living lineages enduring through time. I couldn’t yet see what she saw, though.

If you’re thinking, “How hard can it be for two biologists to share their insights?”, then go read Kuhn about paradigms. Each of us inhabits our own worldview that constrains what we are able to see and hear. Not only did each of us not know quite what we wanted to say to the other, we struggled to hear the other as well. A collision of two worldviews, each half muddled, is as likely to yield all muddle as all clarity.

The difficulty of understanding other worldviews applies even within myself. Our eventual framework is so obvious to me now that it’s really hard for me to understand and describe what the Wayne of 3 or 4 years ago was thinking, how his conceptual landscape was structured. I recall it as poorly as a town I visited in a dream — I can’t relate its signposts to those I see now. Our paper is not a map drawn stroke by stroke. The lines changed and dissolved and reformed as paradigms shifted, as we sketched with two confused hands. Any narrative that used today’s eyes to describe the drawing of the map, and tried to tell a story of Jeannette and me adding lines one after another, would be false.

Rather than mislead you with a false tale of linearly accumulating ideas, I will tell you instead about how our collaboration unfolded to my eyes. Jeannette and I tried to compare notes occasionally, but it didn’t lead very far in the first few years. I muddled along with my flashlight as she muddled with hers. Our ideas simmered slowly, often separately, Jeannette’s in her readings and teaching and cogitation, mine in my readings and writings and sketching.

An important contributor to the paper has been our co-teaching the basic evolutionary biology course at UBC. Jeannette gives the lecture on species concepts. Each semester, she and the students would collaborate, they providing willing and curious ears, she finding anew the words to explain species to them. I was there to eavesdrop. Each semester I’d hear her lecture, and some of her thinking would find its way into my mind. I swear, I was taking more notes than the students.

Bit by bit, we made progress. Text that Jeannette wrote in early 2021 — a snippet is “if we choose to look carefully, species will reveal their natures” — clashed with my perspective then, but a year later that same text not only made sense to me but had become central to our developing theme. Jeannette’s vision was seeping into my resistant brain (and perhaps mine into hers), and my shattered image of species was starting to become whole. By the start of 2022 we had achieved a hazy version of the final plot. We might have published at that point, but we knew there were still unlit corners big enough to house logical demons ready to take all of our thinking back to zero. The map was still only 70% drawn.

By late in the summer of 2022, something in the simmering pot had jostled around the ideas and the courage. Jeannette found greater clarity in her vision of species and in how to express it. I, finally, was fully ready to hear her concept of species waiting to be seen. (Remember that I’m telling this story from my perspective. She may say the converse, that I found my voice and she found her ear.) A fundamental shift in my thinking had happened: I had been seeking what we call “closed” species concepts in our paper — those that specify criteria for species status that are necessary, sufficient, and invariant — but I needed to let go of that completeness and universality. I needed to allow for an open species concept, that only partly defines what species are, leaving the rest to nature. In just a few months, our integrated picture came in sharp focus. Light flooded the formerly-dark corners. Many of the auxiliary issues resolved. We found confidence. I must confess, I was a bit giddy with excitement.

To my surprise — actually, astonishment — we ended up not with detached pluralism, but a strong recommendation about the nature of general-purpose species in biology. But, it’s not a tightly-defined species concept. It is a statement of two necessary conditions of a general-purpose species concept (it must embed cohesive processes, and it must be retrospective). It leaves the rest to Nature and biology, and perhaps, to each clade, as different groups of organisms may have different ways to be species.

We don’t yet know how the biological community will respond to our paper, but for me it’s been a lovely journey. We were just climbing upward. We hadn’t expected to find ourselves suddenly at the top of a mountain, but we did. It feels like an answer, which I had never anticipated. I won’t try to argue for its novelty. It is just a step away from other published species concepts. It feels to me that biologists were already seeing it, some directly and some out of the corners of their eyes, and we just brushed away some fog, focussed attention on it, and articulated it.

I attribute our progress (for ourselves, if not for the field) to the two things I mentioned at the start, patience and courage. We had the patience (and opportunity) to let our ideas simmer slowly. Heat and cool ideas too quickly, and you get committed to the wrong choices, you get glass, brittle. Heat and cool them slowly, and you get crystals of great size and strength. (Materials scientists, please don’t complain that glass can be stronger than crystal. Just go with the poetry.) I believe deeply in the value of letting a conceptually-difficult project drift in and out of consciousness over many months, not rushing its growth. Perhaps I want to believe that only because of my introverted and cautious nature, but also, I’ve experienced remarkable success with simmering in the past (especially, with Mesquite). I recognize, though, that such patience is rarely possible in modern science.

Our courage was to work with someone who didn’t see things my/her way, and therefore had the most to teach me/her. That balance between the necessary and the as-yet-unknown, the momentary and the enduring, the dissected and the whole, the tamed abstract and the untamed reality, is the balance between my starting point and Jeannette’s. It would be wrong to say that I contributed the one half and she the other, because both of our respective conceptual universes extend to both sides, but she had greater strength on the one side, I on the other.

I feel as if I came to this project trying to paint a portrait of species with blue, violet and ultraviolet paints, and a bit of yellow for highlights. Cool, abstract, and prescriptive. It wasn’t working. I got stuck conceptually, unable to form a complete image. Jeannette brought a vision of a complex, integrated system, whole and dancing with life — a different set of paints, red, orange, and green. My colours were synthesized; hers belonged to nature. It wasn’t until we combined our colours that our palette was complete. We could finish the painting. Its new understanding could not have been achieved by either one of us alone. On this journey I have been (and I feel as if I have been) Jeannette’s student, and perhaps she has been mine, and that is what makes a good collaboration.

As much as we have learned from working together, I think that Jeannette and I will continue to lean in different directions. I find the cool abstract ideas more interpretable, but I think that Jeannette, with her greater patience and ability to see complexity on its own terms, not moving so quickly to dissect as I do, sees the living reality, the reds and oranges, as more real and visible, the blues and violets as oversimplified or even partially invented. The challenges we faced in this project were as much about navigating our own minds and biases, and becoming open to others, as they were about evolutionary theory or organisms. It’s made me better aware of my own bias, and I think that of much science, toward dissected and sterilized ideas. Jeannette’s paint colours are harder to work with, and harder to communicate, but because they touch the blood of reality, we need to pay more attention to them (and to Nature), not less.

The scientific process must be lit by the harsh glare of evidence and logic, but it must be accompanied by grace: an offering of open attention towards Nature. The reductionist programme would have us believe that all understanding comes from shattering into pieces and parameters. I might accept that ideas, as they mature, should resolve towards crisp logical abstractions, but we cannot forget that they are our brass rubbings, not nature’s original art. As nature is being explored, as possibilities are being conceived and tested, science must dare to look outward to the untamed, to look beyond our inner dialog, to listen rather than to speak. This is natural history. Science would be barren if it looked only inward to our mental constructs. It would be impoverished if it did not take advantage of the old and deep ability that humans have (some more than others) to grasp flow and collision, form and movement. By taking a stance of listening to nature, with patience and deference, one is put into a different mode of attention, open to surprises. What is heard while listening guides, or at least should guide, what path is chosen. Even after science finds and follows a path of shattering and quantification, our ears and eyes should remain always open, lest we succumb to the hubris of artificial certainty. Science is always both exploring and testing, back and forth, nature and ideas tumbling through time.

And so, we centred our species concept at the balance between abstraction and nature’s reality: our abstraction requires process and retrospection, but Nature retains control over the fullness of its living realization.

Although I’ve emphasized the differences in our approaches, I learned better over this journey how much they are alike. Jeannette and I share, by inclination, a common belief in both logic and listening. Even though I suggested I lean toward abstract dissection, and she toward attention to the whole, both of us have strength in and commitment to both. Jeannette’s logic is fierce. I have long listened to the spiders. Both of us have sought to find the edge between what to control and what to let go. That shared balance is what drove this paper.

What came together in this paper wasn’t just Jeannette’s worldview and mine. It was also two halves of me. For so much of my career, theoretical Wayne and the practicing taxonomist Wayne didn’t speak much to each other. The latter already lived in a worldview of lineages much like Jeannette’s, alive and breathing. That Wayne already saw and painted spider lineages in all the colours of light, but he didn’t have much of a voice, didn’t have much to say except in the language of spiders. In effect, Jeannette helped him find a broader voice, perhaps just as I might have helped Jeannette’s theoretical half strengthen her voice.

I feel lucky, not only to have had the luxury (yes, it is a privilege) to spend 7 years on a paper, but to have a collaborator who was also willing to spend that long, and who was willing to work with someone (me) who was (and is) still learning how to listen to untamed ideas and untamed Nature. To Jeannette: Thank you.

Note at end:

About retrospection, I’m referring to some verbal comments I made at a conference in a discussion session about behaviour and species, in 1986. My comments were included in the published transcript (cited as “Maddison in Vlijm, 1986”) in the proceedings volume. I don’t remember why I spoke up about species concepts, given that the discussion wasn’t supposed to be about species concepts, but in 1986 it wouldn’t have been surprising for the discussion to veer in that direction. Because the proceedings are not available electronically, and likely only (now elderly) attendees have them, I will give here the full text of my part of it. I correct two errors, “potentially” to “potential” and “vieuwing” to “viewing”, and add a comma.

Wayne Maddison remarks, with respect to the biological species concept vs. the phylogenetic species concept: “The biological species concept might be thought of as prospective or viewing the future, in that potential interbreeding might predict whether populations now separate might later recombine. Units so delimited might behave to some extent as evolutionary units, since they would be like ropes that become unbraided occasionally, yet would rebraid and so maintain a cohesiveness. While such units seem relevant to evolution, they may be inappropriate for use in testing theories about evolutionary processes. To test process theories we need to determine what has happened in evolution, and to do this we reconstruct changes by looking at how characters vary within and among units (species). This reconstruction of history would best proceed if our units reflected history, that is if they were phylogenetic (monophyletic) species. Dreams of the future will not help us; since all of our data are of the present and past, our units by which we interpret these data must also be strictly historical. That is, we need monophyletic species, which are not necessarily biological species. Of course, this argument may be irrelevant to the question of ethological vs morphological distinctions since we use ethological characters either to reconstruct phylogeny or as evidence for reproductive isolation and likewise for morphological characters.”


From: Vlijm L. 1986. Ethospecies. Behavioral patterns as an interspecific barrier. Actas X Congreso Internacional de Aracnologia 2:41-45.

I don’t know whether to be proud or embarrassed that my views have changed so little. The 1986 argument isn’t fully correct to my 2023 eyes — monophyly isn’t enough; we can test some process theories with data of the present; species serve for purposes beyond testing process theories — but it anticipates one of the core arguments in our paper.

Norman Platnick 1951-2020

Norman Ira Platnick, by many measures the greatest arachnologist of the past century, entered the field young and with impact. This past week he left it far too early, to our heartbreak, through his unexpected death at the age of 68. He contributed to spider systematics in so many ways that it’s simply not possible to think of the field without encountering his deep influence.

In each of three broad areas — empirical spider systematics, biodiversity informatics, and systematics theory — he contributed so much that were it his sole effort, his life would now be celebrated for it. He got his hands dirty with nature, as a spider taxonomist, surpassed only by Eugène Simon in describing spider species new to science: more than 2000 species discovered. He was the careful librarian and infrastructure-builder, pulling together and organizing the literature through the World Spider Catalog, a key resource in informatics that we use day after day. He was the obsidian-sharp thinker, clarifying the logic of biological systematics, helping to lay the foundation of how we think about the structure of biodiversity. In each of these areas he was a builder and a leader, and though his self-confidence was fierce, his mission was not his own glory: he served the spiders, and the arachnologists, and those who think clearly. I never asked him, but I suspect he might have said that he served the truth.

His work affects many of us every day that we work on spiders. On such a lucky day I go online to the World Spider Catalog to find details of the literature on spider species. It’s infrastructure central to my life, like the intersection near my house whose shops sustain me. I’m sure it’s the same for other arachnologists. The catalog allows us to work fluidly, quickly, focusing on the spiders rather than struggling to trace literature. Now maintained and beautifully enhanced by Kropf, Nentwig, Gloor and their team, this amazing resource would likely not exist in digital form without Platnick’s efforts. He began the catalog in 2000 as a digital translation and update to Brignoli’s catalog, whose catalog in turn was an update to Roewer’s. By digitizing it, Norm gave it new life, making its continued maintenance feasible. Norm’s attention to correctness and detail is well known, and thus the catalog became a highly trusted reference. A small sign of its perfection: In about 2013, I wrote a script to process Norm’s HTML code, as I wanted to get lists of species and genera in a different form. Even though he wrote the HTML code by hand with a basic text editor (to my knowledge), it was so regularly formed that my script had no trouble at all parsing the file, error-free.

His work on spider species will continue to affect us for centuries. Each of his 2000 new species discovered is a permanent contribution to our knowledge of what is in this world. Through his descriptions the basic features of these species are known, but more importantly the species are now doors open to us: we know to find more and to study their bodies, lives, and interactions. They, and Norm with them, will be remembered. However much Norm may have seemed dedicated to abstract thought (e.g., the sections “Form”, “Time”, and “Space” of Nelson & Platnick 1981), he was deeply bound to concrete discoveries like those of novel species. Indeed, his strong opinions in theoretical realms may have arisen precisely out of this focus on the concrete.

Norm’s impact on systematic theory is harder for me to gauge, because there was such a diversity of voices during the years of his greatest influence. (Also, I belong to a different subspecies of cladist, and I see my school of thought descending only partly from his.) Norm’s prodigious mind, which brought him to undergraduate studies while not yet a teenager, and a Harvard PhD at 21, entered the 1970s wars in systematics with enthusiasm. His opponents may have seen his approach as more philosophical than biological, but the conceptual cobwebs in the attic of systematics had grown rather dense by the late 1970s, and it was high time to give the field a thorough cleaning. He was one of the more prominent members of a group stripping the attic to its bare wood.

The paper of his that had the most impact on me is his 1977 paper “Cladograms, phylogenetic trees, and hypothesis testing”. It provided a critical load-bearing element in my thinking about phylogenetics. In it he argues that a line on a phylogenetic tree diagram shouldn’t be taken as representing a literal lineage descending through time, but merely as a claim of a group united by recency of common ancestry, because the latter is often all we can hope to distinguish with data from visible traits. This paper stands inside me like a conscience, cautioning me about the limits of knowledge. I still tell its core lesson when I teach about integrating fossils into phylogenetics.

Norm’s theoretical writings were terse, with the directness of someone sure of his ideas and their correctness. I did not talk to him enough to know his mind well, but it seemed that he rendered judgments in stark contrasts of true and false, evidence and non-evidence, preferring the black and white logic of the tangible, the visible, the concrete character, the synapomorphy. He did not see evidence within the machinations of cloudy grey probabilistic models and statistical methods. The field of phylogenetics has largely come to embrace those clouds, and is willing to take risks Norm was not, seeing a tree diagram’s lines as descending lineages. The arc lamp of Norm’s logical scrutiny, however, still throws into sharp relief the costs we must pay in assumed generalizations.

Some of his contributions are not easily traceable, like the largest tree in the forest whose hidden roots bind and support the soil far beyond its crown. Norm gave us leadership in the way it matters most: a leadership of values. He had an uncompromising dedication to, and respect for, basic discovery, the organism, evidence, logic, and those who shared his passion. Through his research, his leadership of societies, his mentoring of early career arachnologists, he affirmed these values, even while a different suite of values, which need not have competed but which did, was sweeping the field. His theoretical inclinations may have been seen as a denial of advances in molecular and statistical methods, and to a certain extent they were, but it is more productive to see them for something else they also were: an affirmation of the value of the simple, permanent, and central discovery of what is: the organisms of this earth and their visible traits. The proclamation and exemplification of this value, through which he humbly put the organisms ahead of himself and theory, was perhaps his greatest contribution.

(For a fuller account of his life and work, see the In Memoriam posted on the AMNH website)

Edit: Updated the link to the In Memoriam on the AMNH website.

To the early career scientists affected by #PruittData

I have been both heartbroken and heartened following the news of irregularities in Jonathan Pruitt’s data in published papers on animal behaviour. Heartbroken, thinking of the students and other young scientists whose publication records will be diminished by retractions, of those whose trust in science has faltered. Heartened by the courage of the co-authors to step forward (Kate Laskowski and Ambika Kamath led the first public announcements), and by the compassion and efforts of those like Daniel Bolnick to replace clouds of suspicion with clear-headed assessments. I have been reminded that the scientific community is indeed a community.

To those injured by this collapse of trust: You are a member of a community, and this community is rallying to heal, and to support you. Your honest and sincere efforts to understand nature are appreciated; they are contributions regardless of the fate of the papers. You should not blame yourself for not having noticed the flaws in data handed to you by a respected scientist. We, the community, have a responsibility to support you as you recover your path.

I left my first scientific conference — 1977 American Arachnology — feeling as if I had just joined a family. I felt welcome, but that wasn’t what struck me. Rather, I could see the genuine happiness when old colleagues met, the pride of supervisors and their students, the excitement of new connections and ideas. Sharing was everywhere. Sharing remembered, sharing in action, sharing planned. In subsequent arachnological conferences, I wondered if arachnology is special because we are united by our quirkiness, studying creatures few people appreciate. But I’ve grown to see that many scientific communities are like this, networks of trust and cooperation.

Yes, Arachnology has its problems, just like any family, but I have been amazed, for all the decades of my career, at the quality of the people. Intelligent, sincere, cooperative, dedicated, responsible, compassionate, and honest. And, generation by generation, the newest members of the family are welcomed, nurtured, and grow into world-class scientists. They contribute even earlier in this generation, as they learn and lead through social media. Indeed, much of the healing process happening now is being led with thoughtful commitment by early-career scientists.

I’m grateful to be part of this community. I’m also grateful that arachnids have scientists such as you to study them and celebrate them.

The dark age of spider collecting

I fear that the 2000s and 2010s will be looked back on as the dark age of spider collecting for taxonomy and systematics. Traditionally, researchers discovering and archiving specimens of spiders have used 70% to 80% ethanol for preservation, as it’s strong enough to ensure no decay, but has enough water that the bodies retain some flexibility. If higher concentration ethanol is used (95% to 100%) the bodies become brittle, and are likely to break when examined. Also, they tend to be distorted, as their legs can collapse as their water is drawn out quickly. For morphological study, it’s pretty clear that 70-80% ethanol is better for spiders.

But for molecular studies, the 20% to 30% water has been a real problem, because it degrades the DNA. For this reason many spider researchers (including myself) have collected most of their material over the last two decades in 95%. Good for DNA, not so great for morphology, though marginally acceptable.

An example of the perils of 95% ethanol: In 2007 I was collecting in Gabon, and had many beautiful specimens from Monts de Cristal preserved in 95% ethanol. Our next site was a harrowing 50+km drive down a rain-gullied dirt road. We held on for our dear lives (literally) as we were tossed around in the back of the pickup truck bouncing down the road at 40 to 80 km/hr. The little pickled spiders in their vials had nothing to hold on to, and when we arrived I found that they were floating in a soup of their own setae (hairs). Many of the spiders were bald because the 95% ethanol robbed the bases of their setae of flexibility, and being brittle, they just snapped off.

Such are the costs of doing molecular phylogenetics, and 95% ethanol preservation seemed worth the cost to be able to gather this vital source of phylogenetic information.

But, with molecular methods improving, we will soon come to the point where a specimen in 80% ethanol can yield good enough DNA data easily enough that the tradeoff no longer favours 95%. We will go back to preserving in 80% ethanol.

And so, I imagine this conversation in 2050:

Student: I’d like to study thiratoscirtine jumping spiders. Where should I start?

Professor: Best to start studying Mbuta’s material from the 2030s. There’s also some good material in Tervuren from the 1990s.

Student: But why not start with the large amount of Gabonese material collected by Maddison in the 2000s?

Professor: Work on that last. It’s not in good condition. It was preserved in 95% ethanol.

Student: 95% ethanol!!!! How awful! Why?

Professor: Sigh. Let me tell you a story about how gene sequencing used to be done….

Portraits of Singapore

Some day, when I can play the violin and have the tangle of cables behind my desk dusted and organized, I’ll learn how to paint in oils, and I’ll do formal posed portraits of jumping spiders in book-filled studies or luxurious garden backdrops. In the meantime here is the unusually proportioned Cocalus, from Singapore.

Cocalus female. Note the long palps, the low position of the lateral eyes, and the big posterior median eyes. She’s a spartaeine.

And here are, respectively (from top left, across and down), the alien Viciria, the grumpy Pancorius, the direct Parabathippus, the fabulous Chrysilla, the spooky Portia, and the self-assured Hyllus.

Portraits of Singaporean jumping spiders

Singaporean gold

The jumping spider tribe Chrysillini takes its name from the genus Chrysilla, whose name means, more or less, the little golden one. Gold promises brilliance, and Chrysilla is more than brilliant gold — it’s a jewel of many colours. Here is a stunning male we got on Pulau Ubin in Singapore:

Chrysilla male from Singapore

The chrysillines are quite common across Eurasia and Africa, and are a target of our collecting in Singapore. We found many species of chrysillines, including species of Siler, Cosmophasis, Menemerus, Epocilla, Pseudicius (s. lat.), Phintella, and Phintelloides. Here are gloriously shiny males of the latter two genera

Males of Phintella and Phintelloides

Common in some places in Singapore are charming little chrysillines that I think belong to Helicius. Here are females of two different species that we think are closely related, because there respective males are quite similar.

Females of two species that I think are Helicius

As with the Plexippina, the Chrysillini include only a few species in the Americas, and so it’s a branch of the family I can’t find in my backyard.

Formalities of the Plexippina

A bit of formality: The traditional taxonomic classification has families, genera, and species. Sometimes, a family is divided into subfamilies, and the subfamilies into tribes. Within the jumping spider tribe Plexippini, there are even subtribes, one of which is the Plexippina. This species-rich group is ubiquitous in Eurasia and Africa.

The Plexippina deserve a bit of formality, as the males of one of the most familiar species, Plexippus paykulli, wears a sharp tuxedo of black and white. In Singapore we found plenty of other species of plexippines, most with more relaxed — or outrageous — attire. Among the most outrageous is the very large jelly-green Artabrus:

Adult male Artabrus, a large green member of the Plexippini.

I had never seen a living Artabrus before, and I was thrilled. Contrasting against its greenness were two orange-and-black species of Pancorius:

Two orange-and-black Pancorius species

A big and a little Evarcha from Pulau Ubin were of special interest for the colour vision study, as we suspect some African Evarcha can distinguish red:

Two species of Evarcha, to the same scale, both males.

In the Americas we have only two native species of Plexippini, both Evarcha, and so it’s quite a treat to see so much plexippine diversity. Here are a few of the other plexippines we found in Singapore.

A sampling of plexippines from Singapore

A Wall of Neon Lites: Update to “Apologies to a Spider”

A couple of weeks ago I blogged about my dismay in losing a special specimen, a tiny tiny striped jumping spider that escaped in my hotel room. I regretted losing the chance to make the species better known. Well, we have an update.

A few days before leaving Singapore, we went back to the same area to look for more. After several frustrating hours, I found another specimen of the tiny striped thing. Not just one, but three, in the same shake of some ferns. Over the next few hours, we homed in on the habitat, and could predictably find more. This is one on my beating sheet:

My finger pointing to an adult male Neon sumatranus on my beating sheet.

Here’s where they live. In the forest are occasional small sunny clearings, possibly where a tree has fallen, and these clearings are choked with ferns. The ferns rise upward along the trees facing the clearing, forming walls of lush fern-ness. Underneath, in the tangle of stems at the base of these rising ferns, is moist leaf litter suspended just above the ground. The tiny striped spiders seem abundant in that leaf litter, and at least in the morning, up among the green ferns themselves.

Where Neon sumatranus lives

Kiran and I found several males and several females, and we knew we had everything that we needed to characterize them. As soon as we got back to the lab, I looked at a male under the microscope to figure out what it was, and got a surprise: we don’t need to do the basic characterization, because it’s already been done. It’s a known species.

 

Not only is the species known, but it’s closely related to a species I grew up with in Canada, Neon nelli. The tiny striped thing is Neon sumatranus, described by Dmitri Logunov in 1998, from Sumatra and Borneo. How could I not have recognized it as a Neon? Well, all of the Neon species I’d seen in the past are “bigger” (i.e. 2.5 mm instead of 1.5 mm), and with characteristic black and brown colours. Neon sumatranus is quite unusual among Neon for its super small size and its stripes.

The other thing that kept Neon from my mind is that I think of them as temperate zone creatures, being best described from Europe, northern Asia, and North America. This is not the correct way to think about them, however, as phylogenetic evidence and unpublished explorations suggest that Neon is actually an Australian group that has dispersed around the globe. So, finding it in southeast Asia shouldn’t have been a surprise to me.

I’m not disappointed that it is a known species, and that I was needlessly upset at losing the first male specimen. That upset provoked me to introspect, which was useful. And while it was known, it was barely known, as is the case for most of the world’s species. Now, we can learn more about it. And, they are *so cute*. Here’s a video of a male. Remember he’s 1.4 mm long.

As one of the smallest jumping spiders, it challenges us to explain how it can pack the sophisticated visual system of salticids into such a small head. Vision biologists want to know the answers to such questions. Now that we know how to find Neon sumatranus predictably in the ferns of Singapore, we have a chance to study their tiny tiny eyes.

In the Neighbourhood of Nannenines

We’re all used to biodiversity being localized — kangaroos in Australia, tigers in Asia — but the degree of localization varies from group to group. A broader group of species may be distributed across the world (e.g. bats), even though individually each of its distinct species might have a limited range. In the case of jumping spiders, some broader groups are quite restricted. Nannenines, for instance, are only in southeast Asia, the thiratoscirtines only in Africa.

Singapore, and southeast Asia in general, is the land of nannenines. That mouthful of Ns refers to a group of species of little jumping spiders most of whom hop on the leaf litter of forests. They hold a special place in my heart, for I met them on my memorable first trip to Asia in 2005. Back in Singapore 14 years later, I was pleased to see some familiar faces. Here are two, Idastrandia and Nannenus, shown at the same scale.

Males of Idastrandia orientalis (left) and Nannenus syrphus (right), to same scale. 

From my previous sampling, there remained some puzzles. For example, in 2005 I’d found two types of male Nannenus and two types of females, but I couldn’t figure out which male matched with which female. (I could have seen which males mated with which females, but that type of behavioural experiment requires more specimens and time than I had.) Now I think I’ve figured it out by getting paired types in the same patches of leaf litter. This seems to be the pairing.

Nannenus species A (left) and B (right), with males on top and females on bottom. Yes, they look a lot alike.

Nannenines are very poorly known; there are many species that I’ve collected, but only a few have been described scientifically. Perhaps they haven’t been as well collected as other salticids because they are hidden in the dark forests.

I suspect their preference for dark humid places is also the reason they are localized to southeast Asia. For their ancestors, finding a moist and shaded path between southeast Asia and the African rainforests, for instance, was rather difficult, with habitats inhospitable to them — deserts and savannahs — intervening. Reciprocally, the thiratoscirtines of Africa are mostly isolated to the shaded rainforests, and are not known from Asia. In contrast, groups of jumping spiders that live in open sunny habitats, like the chrysillines and plexippines, are widespread across Africa, Europe, and all corners of Asia. If you want to find the unique salticids of an area, go to the humid darkness.

Convergence on Colour

I’d mentioned in a post earlier today that there was a second motivation for me to come to Singapore beyond basic biodiversity discovery. We are here to survey spiders for their colour vision, working with Li Daiqin of the National University of Singapore. I’ve visited Daiqin before, in 2005, when we worked together sampling jumping spiders. Here he is, 14 years ago, arranging our field work as we travelled by boat to Palau Ubin.

Li Daiqin in 2005, going to Palau Ubin for field work.

Daiqin is a well known spider biologist studying their behaviour, physiology, and ecology. In other words, how they function as organisms. Normally, these aren’t topics I work on, but we can understand evolution more completely by studying function (Daiqin’s expertise) in multiple species and mapping it on the evolutionary tree (my expertise). Thus my second motivation in coming to Singapore is to help study the evolution of how jumping spiders work, using diverse representatives from the Singaporean fauna.

In the last paragraph I shouldn’t have used the singular pronoun “I”, because really I am just part of a large team that is coming to Singapore this month to study jumping spiders’ ability to see colours. The team, led by Nate Morehouse of the University of Cincinnati, chose Singapore as a perfect blend of accessible diversity and world-class science. I’ve explained in a previous post why spider colour vision so interesting that we have formed an international collaboration to study it.

The five spider biologists converging on Singapore are Nate Morehouse from the University of Cincinnati and David Outomuro and Jenny Sung from his lab, and myself from the University of British Columbia and Kiran Marathe from my lab — representing in total five different countries (USA, Spain, China, Canada, and India).

And so, for the next two weeks we’ll be in the forests, mangroves, swamps and beaches of Singapore to look for diverse jumping spiders to study for their colour vision. We also look forward to the hawkers’ markets, the beautiful cityscape, and the friendly people of Singapore.